STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0040PFAM: Forkhead-associated protein; KEGG: cth:Cthe_1334 FHA domain containing protein. (580 aa)    
Predicted Functional Partners:
Cphy_2486
PFAM: protein of unknown function RIO1; protein kinase; tyrosine protein kinase; PASTA domain containing protein; SMART: serine/threonine protein kinase; KEGG: csc:Csac_2076 protein kinase.
 
 
 
 0.962
Cphy_0034
Hypothetical protein; KEGG: cth:Cthe_1337 type II secretion system protein.
 
     0.802
Cphy_0036
Hypothetical protein; KEGG: cth:Cthe_1829 chromosome segregation ATPases-like protein.
 
   
 0.776
Cphy_0033
KEGG: cth:Cthe_1338 Flp pilus assembly protein TadB-like protein.
 
     0.753
Cphy_0037
Hypothetical protein.
 
     0.750
Cphy_2702
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 CheC, inhibitor of MCP methylation.
  
 
 0.719
Cphy_0002
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
   
 
 0.703
Cphy_0032
PFAM: type II secretion system protein E; KEGG: cth:Cthe_1339 type II secretion system protein E.
 
    0.671
Cphy_3751
PFAM: protein kinase; SMART: tyrosine protein kinase; serine/threonine protein kinase; KEGG: cac:CAC0404 serine/threonine protein kinase fused to TPR repeats domain.
 
 
 
 0.650
Cphy_0038
PFAM: peptidase A24A prepilin type IV; KEGG: cth:Cthe_1335 peptidase A24A, prepilin type IV.
 
     0.621
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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