STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0050TIGRFAM: sporulation protein YyaC; PFAM: protein of unknown function DUF1256; KEGG: cth:Cthe_2165 protein of unknown function DUF1256. (197 aa)    
Predicted Functional Partners:
gpr
GPR endopeptidase; Initiates the rapid degradation of small, acid-soluble proteins during spore germination; Belongs to the peptidase A25 family.
  
  
 0.796
Cphy_0127
TIGRFAM: transcriptional regulator, AbrB family; stage V sporulation protein T; PFAM: SpoVT/AbrB domain protein; KEGG: cpe:CPE2482 stage V sprulation protein T.
  
  
 0.749
Cphy_2521
TIGRFAM: stage III sporulation protein AD; PFAM: Sporulation stage III protein AD; KEGG: amt:Amet_2495 sporulation stage III, protein AD.
  
     0.747
Cphy_2524
TIGRFAM: stage III sporulation protein AA; SMART: AAA ATPase; KEGG: pth:PTH_1166 hypothetical protein.
  
     0.737
Cphy_0138
Protein serine/threonine phosphatase; KEGG: cth:Cthe_2681 serine phosphatase; PFAM: Stage II sporulation E family protein; SMART: protein phosphatase 2C domain protein.
  
     0.733
Cphy_2520
KEGG: amt:Amet_2496 sporulation stage III, protein AE.
  
     0.727
Cphy_2759
PFAM: peptidase S14 ClpP; KEGG: cth:Cthe_1097 peptidase S14, ClpP.
  
   
 0.726
Cphy_1324
PFAM: nucleoside recognition domain protein; KEGG: tte:TTE1484 hypothetical protein.
  
    0.719
Cphy_0829
PFAM: GerA spore germination protein; KEGG: ctc:CTC01776 spore germination protein KA.
  
     0.718
Cphy_2518
Hypothetical protein; KEGG: cth:Cthe_0839 stage III sporulation protein AG.
  
     0.706
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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