STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_0068PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: syn:slr0891 N-acetylmuramoyl-L-alanine amidase. (560 aa)    
Predicted Functional Partners:
Cphy_1337
PFAM: cell cycle protein; penicillin-binding protein transpeptidase; KEGG: ckl:CKL_3568 predicted peptidoglycan synthetase.
  
 
 0.718
nnrD
Carbohydrate kinase, YjeF related protein; Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. Catalyzes the epimerization of the S- and R-forms of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration. This is a prerequisite for the S-specific NAD(P)H-hydrate dehydratase to allow t [...]
 
   
 0.680
Cphy_2257
PFAM: protein of unknown function DUF187; KEGG: btk:BT9727_0818 conserved hypothetical protein and possible S-layer protein fusion.
   
 0.664
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
     
 0.659
Cphy_1886
PFAM: NLP/P60 protein; Peptidoglycan-binding domain 1 protein; KEGG: gtn:GTNG_3106 cell wall lytic activity.
  
  
 0.623
Cphy_0268
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; KEGG: pfo:Pfl_4625 histidine kinase.
 
  
 0.620
Cphy_3607
PFAM: peptidase M23B; KEGG: tte:TTE1975 membrane proteins related to metalloendopeptidase.
 
  
 0.610
Cphy_2818
PFAM: cell wall hydrolase/autolysin; KEGG: tte:TTE2424 N-acetylmuramoyl-L-alanine amidase.
  
   
 0.574
Cphy_0069
KEGG: cth:Cthe_0079 hypothetical protein.
       0.528
secF
Protein-export membrane protein, SecD/SecF family; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA; Belongs to the SecD/SecF family. SecD subfamily.
  
  
 0.527
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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