STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0069KEGG: cth:Cthe_0079 hypothetical protein. (206 aa)    
Predicted Functional Partners:
Cphy_0899
KEGG: cth:Cthe_2569 hypothetical protein.
  
     0.575
Cphy_0068
PFAM: Peptidoglycan-binding LysM; cell wall hydrolase/autolysin; KEGG: syn:slr0891 N-acetylmuramoyl-L-alanine amidase.
       0.528
Cphy_2029
Hypothetical protein; KEGG: amt:Amet_3803 copper amine oxidase domain protein.
  
     0.510
Cphy_2638
Hypothetical protein; KEGG: cdf:CD1921 putative ethanolamine utilization/propanediol conserved hypothetical protein.
  
     0.482
Cphy_0804
KEGG: mac:MA3471 hypothetical protein.
  
     0.430
Cphy_3570
Hypothetical protein; KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein.
  
     0.420
Cphy_1970
KEGG: bra:BRADO1315 hypothetical protein; putative signal peptide.
  
     0.413
Cphy_0070
PFAM: peptidase U62 modulator of DNA gyrase; KEGG: cbe:Cbei_0369 peptidase U62, modulator of DNA gyrase.
       0.407
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.