STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0076PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bay:RBAM_030540 putative multidrug ABC transporter, ATPase component. (257 aa)    
Predicted Functional Partners:
Cphy_0077
PFAM: ABC-2 type transporter; KEGG: spa:M6_Spy0585 SagH.
 
  
 0.860
Cphy_0078
PFAM: ABC-2 type transporter; KEGG: tte:TTE2529 ABC-type multidrug transport system, permease component.
  
    0.830
Cphy_1223
PFAM: ABC-2 type transporter; KEGG: tde:TDE0696 membrane protein, putative.
 
  
 0.622
Cphy_0079
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bld:BLi04006 YxjM.
 
     0.617
Cphy_1224
PFAM: ABC-2 type transporter; KEGG: blo:BL0900 hypothetical protein.
 
    0.580
Cphy_0080
Two component transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; response regulator receiver; KEGG: bca:BCE_1863 DNA-binding response regulator, LuxR family.
 
    0.531
Cphy_0073
PFAM: regulatory protein GntR HTH; KEGG: cac:CAC0599 transcriptional regulator, GntR family.
  
    0.457
Cphy_1835
KEGG: bha:BH1004 putative ABC-2 type transport system permease protein.
 
 
 0.446
Cphy_1279
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; KEGG: drm:Dred_1515 regulatory protein GntR, HTH.
  
    0.422
Cphy_2235
PFAM: regulatory protein GntR HTH; KEGG: cac:CAC0265 transcriptional regulator, GntR family.
  
    0.422
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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