STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0077PFAM: ABC-2 type transporter; KEGG: spa:M6_Spy0585 SagH. (352 aa)    
Predicted Functional Partners:
Cphy_0076
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: bay:RBAM_030540 putative multidrug ABC transporter, ATPase component.
 
  
 0.860
Cphy_0078
PFAM: ABC-2 type transporter; KEGG: tte:TTE2529 ABC-type multidrug transport system, permease component.
  
  
 0.789
Cphy_3310
Hypothetical protein; KEGG: aor:AO090138000086 predicted protein Pfam: Glyco_hydro_49 Glyco_hydro_28 Zn_clus Fungal_trans BCNT PROSITE: ZN2_CY6_FUNGAL_1 ZN2_CY6_FUNGAL_2; Belongs to the glycosyl hydrolase 28 family.
  
     0.735
Cphy_0720
Flavin-nucleotide-binding protein-like protein; KEGG: ret:RHE_PC00112 hypothetical protein.
  
     0.709
Cphy_3317
PFAM: extracellular solute-binding protein family 1; KEGG: sma:SAV1727 putative sugar-binding lipoprotein precursor.
  
     0.642
Cphy_0079
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bld:BLi04006 YxjM.
 
   
 0.632
Cphy_3526
KEGG: cbe:Cbei_3296 hypothetical protein.
  
     0.632
Cphy_0917
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.619
Cphy_0927
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.619
Cphy_0673
PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein.
 
  
 0.615
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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