STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0082PFAM: protein of unknown function DUF1540; KEGG: cbe:Cbei_2324 protein of unknown function DUF1540. (107 aa)    
Predicted Functional Partners:
Cphy_0083
PFAM: flavin reductase domain protein FMN-binding; Rubredoxin-type Fe(Cys)4 protein; KEGG: sat:SYN_02123 ferric-chelate reductase / rubredoxin.
       0.752
Cphy_0968
PFAM: nitroreductase; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: cbe:Cbei_4919 nitroreductase.
  
     0.729
Cphy_0983
KEGG: cpe:CPE0798 hypothetical protein.
  
     0.728
Cphy_2396
Protein of unknown function DUF204; Probably functions as a manganese efflux pump.
  
     0.632
Cphy_0081
PFAM: Rubrerythrin; Rubredoxin-type Fe(Cys)4 protein; KEGG: cbe:Cbei_2490 rubrerythrin.
 
     0.626
Cphy_2666
KEGG: amt:Amet_3774 periplasmic binding protein.
  
     0.599
Cphy_0539
PFAM: Peptidoglycan-binding domain 1 protein; KEGG: cdf:CD0551 putative spore cortex-lytic enzyme pre-pro-form (putative spore peptidoglycan hydrolase).
  
     0.573
Cphy_1806
TIGRFAM: conserved repeat domain protein; PFAM: protein of unknown function DUF11; KEGG: cbf:CLI_1148 putative conserved repeat domain protein.
  
     0.535
Cphy_2002
PFAM: YCII-related; KEGG: cpf:CPF_0987 hypothetical protein.
  
     0.511
Cphy_0937
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1553 ABC transporter related.
  
     0.484
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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