Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_0114PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0410 ABC-type multidrug transport system, ATPase component. (258 aa)    
Predicted Functional Partners:
Cphy_0115
PFAM: ABC-2 type transporter; KEGG: tte:TTE0411 ABC-type Na+ efflux pump, permease component.
 
 
 0.989
Cphy_2078
PFAM: SMC domain protein; ABC transporter related; SMART: AAA ATPase; KEGG: cth:Cthe_0539 ABC transporter related protein.
 
    
0.748
Cphy_1260
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_4116 ABC transporter related.
    
0.579
Cphy_0113
Hypothetical protein; KEGG: cdf:CD3500 putative foldase lipoprotein (late stage protein export lipoprotein).
       0.572
Cphy_0116
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: fno:Fnod_1613 regulatory protein ArsR.
       0.526
Cphy_1006
PFAM: ABC-2 type transporter; KEGG: mst:Msp_0196 ABC-type multidrug transport system, permease protein.
 
    0.459
Cphy_0360
Hypothetical protein; KEGG: cac:CAC2733 uncharacterized conserved membrane protein.
 
 
 0.446
Cphy_0117
PFAM: regulatory protein GntR HTH; TrkA-C domain protein; KEGG: cbe:Cbei_2872 TrkA-C domain protein.
       0.429
Cphy_2114
KEGG: cth:Cthe_1535 hypothetical protein.
 
   0.426
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.415
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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