STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0115PFAM: ABC-2 type transporter; KEGG: tte:TTE0411 ABC-type Na+ efflux pump, permease component. (405 aa)    
Predicted Functional Partners:
Cphy_0114
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0410 ABC-type multidrug transport system, ATPase component.
 
 
 0.989
Cphy_0113
Hypothetical protein; KEGG: cdf:CD3500 putative foldase lipoprotein (late stage protein export lipoprotein).
 
     0.627
Cphy_0209
KEGG: cdf:CD0308 hypothetical protein.
  
     0.566
Cphy_0116
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: fno:Fnod_1613 regulatory protein ArsR.
       0.526
Cphy_3288
KEGG: csc:Csac_1712 hypothetical protein.
  
     0.465
Cphy_0459
Hypothetical protein.
  
     0.439
mfd
Transcription-repair coupling factor; Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
       0.434
Cphy_0117
PFAM: regulatory protein GntR HTH; TrkA-C domain protein; KEGG: cbe:Cbei_2872 TrkA-C domain protein.
       0.429
Cphy_0137
PFAM: Septum formation initiator.
  
   0.425
Cphy_3553
Hypothetical protein.
  
     0.414
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.