STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0117PFAM: regulatory protein GntR HTH; TrkA-C domain protein; KEGG: cbe:Cbei_2872 TrkA-C domain protein. (214 aa)    
Predicted Functional Partners:
Cphy_0119
PFAM: binding-protein-dependent transport systems inner membrane component; Substrate-binding region of ABC-type glycine betaine transport system; KEGG: cbe:Cbei_2870 substrate-binding region of ABC-type glycine betaine transport system.
 
     0.673
Cphy_0118
KEGG: cbe:Cbei_2871 glycine betaine/L-proline ABC transporter, ATPase subunit; TIGRFAM: glycine betaine/L-proline ABC transporter, ATPase subunit; PFAM: CBS domain containing protein; ABC transporter related; SMART: AAA ATPase.
 
   
 0.654
Cphy_0116
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: fno:Fnod_1613 regulatory protein ArsR.
       0.617
guaA
GMP synthase, large subunit; Catalyzes the synthesis of GMP from XMP.
       0.438
Cphy_0114
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0410 ABC-type multidrug transport system, ATPase component.
       0.429
Cphy_0115
PFAM: ABC-2 type transporter; KEGG: tte:TTE0411 ABC-type Na+ efflux pump, permease component.
       0.429
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.