STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0136Hypothetical protein; KEGG: amt:Amet_0170 spore cortex biosynthesis protein YabQ. (211 aa)    
Predicted Functional Partners:
Cphy_0135
TIGRFAM: sporulation protein YabP; PFAM: YabP family protein; KEGG: cth:Cthe_2659 YabP-like protein.
  
  
 0.967
Cphy_0134
PFAM: RNA-binding S4 domain protein; KEGG: cpf:CPF_2801 S4 domain protein.
  
    0.793
Cphy_0137
PFAM: Septum formation initiator.
  
    0.753
Cphy_0133
Histone family protein DNA-binding protein; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions.
  
    0.743
Cphy_3794
PFAM: Peptidoglycan-binding LysM; KEGG: cth:Cthe_2402 peptidoglycan-binding LysM.
  
     0.720
Cphy_3777
PFAM: peptidase M23B; KEGG: amt:Amet_0360 peptidase M23B.
  
     0.663
Cphy_2517
KEGG: cth:Cthe_0838 hypothetical protein.
  
     0.652
Cphy_3483
PFAM: single-strand binding protein/Primosomal replication protein n; KEGG: cth:Cthe_0559 single-strand binding protein/primosomal replication protein N.
  
     0.546
Cphy_3292
KEGG: cth:Cthe_2069 hypothetical protein.
  
     0.545
Cphy_3824
TIGRFAM: spore coat protein, CotS family; KEGG: ctc:CTC00273 spore coat protein.
  
     0.526
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.