STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0137PFAM: Septum formation initiator. (81 aa)    
Predicted Functional Partners:
Cphy_2472
KEGG: cbh:CLC_1498 cell division protein FtsQ.
 
 
 
 0.944
Cphy_0135
TIGRFAM: sporulation protein YabP; PFAM: YabP family protein; KEGG: cth:Cthe_2659 YabP-like protein.
  
  
 0.782
Cphy_0136
Hypothetical protein; KEGG: amt:Amet_0170 spore cortex biosynthesis protein YabQ.
  
    0.753
Cphy_3553
Hypothetical protein.
  
     0.751
Cphy_2478
PFAM: Septum formation initiator.
  
     0.750
Cphy_2296
Hypothetical protein.
  
     0.746
Cphy_3265
Hypothetical protein.
  
     0.736
Cphy_1337
PFAM: cell cycle protein; penicillin-binding protein transpeptidase; KEGG: ckl:CKL_3568 predicted peptidoglycan synthetase.
 
 
 0.733
Cphy_0459
Hypothetical protein.
 
     0.732
Cphy_0457
Hypothetical protein.
  
     0.729
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.