STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0149PFAM: regulatory protein AsnC/Lrp family; KEGG: csc:Csac_1961 putative transcriptional regulator, AsnC family. (160 aa)    
Predicted Functional Partners:
Cphy_0150
PFAM: aminotransferase class I and II; KEGG: cth:Cthe_0363 aminotransferase, class I and II.
 
  
 0.952
Cphy_0148
PFAM: AIR synthase related protein domain protein; KEGG: tte:TTE1537 hydrogenase maturation factor.
       0.785
Cphy_0147
PFAM: VanW family protein; KEGG: csc:Csac_1552 VanW family protein.
       0.573
Cphy_0152
tRNA/rRNA methyltransferase (SpoU); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.545
Cphy_0151
PFAM: CheC domain protein; KEGG: csc:Csac_1295 CheC domain protein.
       0.483
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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