STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0151PFAM: CheC domain protein; KEGG: csc:Csac_1295 CheC domain protein. (156 aa)    
Predicted Functional Partners:
Cphy_3528
PFAM: response regulator receiver; KEGG: cth:Cthe_0805 response regulator receiver protein.
  
 
  0.926
Cphy_2701
PFAM: response regulator receiver; KEGG: csc:Csac_1271 response regulator receiver protein.
  
 
 0.910
Cphy_2843
PFAM: response regulator receiver; CheW domain protein; KEGG: amt:Amet_2732 putative CheW protein.
   
 
 0.899
Cphy_2838
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase A domain protein; Hpt domain protein; KEGG: pth:PTH_0142 hypothetical protein.
   
 
 0.850
Cphy_0558
PFAM: response regulator receiver; KEGG: dar:Daro_0240 response regulator receiver:ATP-binding region, ATPase-like:histidine kinase, HAMP region:histidine kinase A, N-terminal:Hpt.
   
 
 0.806
Cphy_2684
PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 protein of unknown function DUF342.
  
     0.720
Cphy_0473
PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 protein of unknown function DUF342.
  
     0.689
Cphy_0152
tRNA/rRNA methyltransferase (SpoU); Could methylate the ribose at the nucleotide 34 wobble position in tRNA; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family. TrmL subfamily.
       0.609
Cphy_2500
PFAM: Ig domain protein group 2 domain protein; KEGG: cth:Cthe_0056 Ig-like, group 2.
  
     0.566
Cphy_2702
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 CheC, inhibitor of MCP methylation.
 
  
 0.550
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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