STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0161YkgB; KEGG: bld:BLi04142 YkgB. (100 aa)    
Predicted Functional Partners:
Cphy_0160
PFAM: metal-dependent phosphohydrolase HD sub domain; KEGG: cth:Cthe_1389 metal dependent phosphohydrolase.
       0.705
Cphy_0162
KEGG: dsy:DSY1015 hypothetical protein.
       0.705
Cphy_1010
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; KEGG: mac:MA0999 hypothetical protein.
  
     0.574
Cphy_1581
ABC-type sugar transport system periplasmic component-like protein; KEGG: tte:TTE0286 periplasmic sugar-binding proteins.
 
     0.485
Cphy_0157
PFAM: GCN5-related N-acetyltransferase; KEGG: cbh:CLC_0312 acetyltransferase, GNAT family.
 
     0.460
Cphy_0163
KEGG: cbe:Cbei_2447 GCN5-related N-acetyltransferase.
       0.431
Cphy_0159
TIGRFAM: RNA methyltransferase, TrmA family; PFAM: deoxyribonuclease/rho motif-related TRAM; (Uracil-5)-methyltransferase; KEGG: amt:Amet_4060 RNA methyltransferase, TrmA family; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.410
Cphy_2254
PFAM: GCN5-related N-acetyltransferase; KEGG: tde:TDE2474 acetyltransferase, GNAT family.
  
     0.410
Cphy_1663
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: bld:BLi04061 YwbC.
  
     0.403
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.