STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0163KEGG: cbe:Cbei_2447 GCN5-related N-acetyltransferase. (91 aa)    
Predicted Functional Partners:
Cphy_2560
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cac:CAC3491 protein, related to general stress protein 26(GS26) of B.subtilis (pyridoxinephosphate oxidase family).
   
    0.624
Cphy_1365
PFAM: bifunctional deaminase-reductase domain protein; KEGG: cbh:CLC_0313 RibD domain protein.
  
    0.577
Cphy_1216
KEGG: cbe:Cbei_2367 ribose 5-phosphate isomerase.
  
    0.571
Cphy_0164
PFAM: beta-lactamase domain protein; KEGG: cdf:CD1802 putative hydrolase.
       0.553
Cphy_2463
PFAM: iron-containing alcohol dehydrogenase; KEGG: cbf:CLI_1505 NADH-dependent butanol dehydrogenase.
   
  
 0.537
Cphy_1402
PFAM: 3-demethylubiquinone-9 3-methyltransferase; KEGG: bce:BC2431 PhnB protein.
 
    0.473
Cphy_0162
KEGG: dsy:DSY1015 hypothetical protein.
       0.466
Cphy_0161
YkgB; KEGG: bld:BLi04142 YkgB.
       0.431
Cphy_1765
PFAM: isochorismatase hydrolase; KEGG: cth:Cthe_1178 isochorismatase hydrolase.
  
    0.414
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.