STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0177PFAM: protein of unknown function UPF0153; KEGG: cte:CT0872 hypothetical protein. (224 aa)    
Predicted Functional Partners:
Cphy_0345
Hypothetical protein; KEGG: bsu:BG10173 unknown.
  
     0.653
Cphy_0474
Hypothetical protein.
  
     0.644
Cphy_2436
Sodium pump decarboxylase gamma subunit; Catalyzes the decarboxylation of oxaloacetate coupled to Na(+) translocation; Belongs to the OadG family.
  
     0.615
Cphy_0178
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cdf:CD1963 hypothetical protein.
   
   0.580
Cphy_2710
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
   
   0.568
Cphy_1302
PFAM: putative RNA methylase; KEGG: rca:Rcas_2582 putative RNA methylase.
  
     0.544
Cphy_2377
KEGG: tte:TTE0895 hypothetical protein.
  
     0.540
Cphy_0137
PFAM: Septum formation initiator.
  
     0.533
Cphy_1272
KEGG: tde:TDE1862 hypothetical protein.
  
     0.513
Cphy_0316
KEGG: cbe:Cbei_2712 FliB family protein.
  
     0.471
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.