STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0178PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cdf:CD1963 hypothetical protein. (265 aa)    
Predicted Functional Partners:
Cphy_0177
PFAM: protein of unknown function UPF0153; KEGG: cte:CT0872 hypothetical protein.
   
   0.580
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
 
   
 0.491
Cphy_2911
PFAM: cytochrome P450; KEGG: cac:CAC3330 cytochrome P450 family protein, YBDT B.subtilis ortholog.
   
 
 0.451
Cphy_0179
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: mla:Mlab_0303 hypothetical protein.
     
 0.448
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.