STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0179Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; Helix-turn-helix type 11 domain protein; KEGG: mla:Mlab_0303 hypothetical protein. (87 aa)    
Predicted Functional Partners:
Cphy_0180
PFAM: protein of unknown function DUF1648; KEGG: bcl:ABC3712 hypothetical protein.
 
  
 0.955
Cphy_2129
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: fno:Fnod_1613 regulatory protein ArsR.
  
   
 0.538
Cphy_3470
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: drm:Dred_2967 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.500
Cphy_0116
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; KEGG: fno:Fnod_1613 regulatory protein ArsR.
  
   
 0.470
Cphy_0178
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: cdf:CD1963 hypothetical protein.
     
 0.448
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.