STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0189PFAM: CMP/dCMP deaminase zinc-binding; KEGG: cbe:Cbei_0409 CMP/dCMP deaminase, zinc-binding. (162 aa)    
Predicted Functional Partners:
Cphy_3038
Deoxyuridine 5'-triphosphate nucleotidohydrolase Dut; This enzyme is involved in nucleotide metabolism: it produces dUMP, the immediate precursor of thymidine nucleotides and it decreases the intracellular concentration of dUTP so that uracil cannot be incorporated into DNA.
  
 0.938
tdk
PFAM: thymidine kinase; KEGG: hdu:HD1473 thymidine kinase.
  
 
 0.932
Cphy_1253
PFAM: metallophosphoesterase; KEGG: bcl:ABC0966 nucleotidase; Belongs to the 5'-nucleotidase family.
  
 
  0.904
Cphy_3434
PFAM: metallophosphoesterase; KEGG: sak:SAK_1901 2',3'-cyclic nucleotide 2'-phosphodiesterase/3'-nucleotidase bifunctional periplasmic precursor protein.
  
 
  0.904
cmk
KEGG: csc:Csac_1889 cytidylate kinase; TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region.
    
  0.903
Cphy_0261
KEGG: ppd:Ppro_1070 metal dependent phosphohydrolase; PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region.
     
  0.900
Cphy_1981
5'-nucleotidase; PFAM: 5-nucleotidase; KEGG: har:HEAR0649 putative 5'-nucleotidase.
     
  0.900
Cphy_3839
Cytidylate kinase-like protein; KEGG: msi:Msm_0734 cytidylate kinase, Cmk.
     
  0.900
Cphy_2329
PFAM: deoxynucleoside kinase; KEGG: lin:lin1817 similar to deoxyguanosine kinase/deoxyadenosine kinase(I) subunit.
   
 0.626
Cphy_1957
TIGRFAM: DNA internalization-related competence protein ComEC/Rec2; PFAM: ComEC/Rec2-related protein; KEGG: bce:BC4322 ComE operon protein 3.
  
    0.625
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.