STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0200KEGG: cac:CAC2610 L-fucose isomerase related protein. (494 aa)    
Predicted Functional Partners:
xylB
TIGRFAM: xylulokinase; PFAM: carbohydrate kinase FGGY; KEGG: amt:Amet_0591 xylulokinase.
 
  
 0.727
Cphy_3153
PFAM: RbsD or FucU transport; KEGG: cpf:CPF_1050 fucose operon protein FucU; Belongs to the RbsD / FucU family.
    
 0.555
Cphy_1651
PFAM: major facilitator superfamily MFS_1; KEGG: pst:PSPTO_0838 major facilitator family transporter.
 
  
 0.553
Cphy_1145
PFAM: carbohydrate kinase FGGY; KEGG: cbe:Cbei_4452 carbohydrate kinase, FGGY.
 
  
 0.527
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.