STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0209KEGG: cdf:CD0308 hypothetical protein. (189 aa)    
Predicted Functional Partners:
Cphy_0207
KEGG: cdf:CD0306 hypothetical protein.
 
     0.935
Cphy_0208
PFAM: heat shock protein DnaJ domain protein; KEGG: cbf:CLI_0254 molecular chaperone, DnaJ family.
 
     0.914
Cphy_0137
PFAM: Septum formation initiator.
  
     0.574
Cphy_3525
PFAM: FeoA family protein.
  
     0.570
Cphy_0115
PFAM: ABC-2 type transporter; KEGG: tte:TTE0411 ABC-type Na+ efflux pump, permease component.
  
     0.566
Cphy_0474
Hypothetical protein.
  
     0.530
Cphy_0206
PFAM: arsenate reductase and related; KEGG: ctc:CTC01181 arsenate reductase; Belongs to the ArsC family.
       0.463
Cphy_0363
Hypothetical protein.
  
     0.436
Cphy_0744
KEGG: csc:Csac_0633 ATP-dependent endonuclease of the OLD family-like protein.
  
     0.425
Cphy_3553
Hypothetical protein.
  
     0.413
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.