Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0279KEGG: cbe:Cbei_4038 hypothetical protein. (280 aa)    
Predicted Functional Partners:
Cphy_0280
KEGG: cac:CAC3435 hypothetical protein.
 
   
 0.936
Cphy_1848
KEGG: cbf:CLI_2295 transcriptional regulator, MerR family.
  
     0.701
Cphy_2560
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN-binding; KEGG: cac:CAC3491 protein, related to general stress protein 26(GS26) of B.subtilis (pyridoxinephosphate oxidase family).
  
     0.613
Cphy_3237
KEGG: btk:BT9727_4626 hypothetical protein.
  
     0.559
Cphy_2519
KEGG: cth:Cthe_0840 hypothetical protein.
  
     0.541
Cphy_0944
KEGG: dsy:DSY2794 hypothetical protein.
  
     0.533
Cphy_0941
KEGG: cno:NT01CX_1307 hypothetical protein.
  
     0.529
Cphy_1766
PFAM: TfoX domain protein; KEGG: cbf:CLI_0805 TfoX domain protein.
  
     0.503
Cphy_1864
PFAM: regulatory protein TetR; KEGG: cbe:Cbei_4692 transcriptional regulator, TetR family.
  
     0.495
Cphy_1141
KEGG: amt:Amet_3459 hypothetical protein.
  
     0.475
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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