STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0288PFAM: glycosyl hydrolase family 88; KEGG: rle:pRL120662 putative unsaturated glucuronyl hydrolase. (384 aa)    
Predicted Functional Partners:
Cphy_2744
KEGG: ret:RHE_PF00314 hypothetical protein.
 
     0.780
Cphy_0289
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 putative permease component of ABC transporter.
  
    0.765
Cphy_3022
PFAM: Heparinase II/III family protein; KEGG: cpr:CPR_0402 hypothetical protein.
 
    0.760
Cphy_0290
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease protein.
       0.736
Cphy_0291
PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL120659 putative substrate-binding component of ABC transporter.
 
    0.729
Cphy_2534
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ssv:SSU98_1240 dehydrogenase with different specificities (related to short-chain alcohol dehydrogenase).
 
   
 0.647
Cphy_0490
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cbe:Cbei_3371 short-chain dehydrogenase/reductase SDR.
 
   
 0.644
Cphy_1164
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: cbe:Cbei_3371 short-chain dehydrogenase/reductase SDR.
 
   
 0.617
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.552
Cphy_0293
Two component transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; response regulator receiver; KEGG: tte:TTE0288 CheY-like receiver domains.
 
     0.443
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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