STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0289PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 putative permease component of ABC transporter. (276 aa)    
Predicted Functional Partners:
Cphy_0290
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease protein.
   0.960
Cphy_0291
PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL120659 putative substrate-binding component of ABC transporter.
 
   0.865
Cphy_0527
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120664 putative permease component of ABC transporter.
 
   0.851
Cphy_1014
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2416 ABC-type sugar transport systems, permease components.
  
   0.851
Cphy_1390
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: lin:lin0218 similar to sugar ABC transporters, permease proteins.
 
   0.851
Cphy_3032
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: efa:EF2233 ABC transporter, permease protein.
  
   0.851
Cphy_0593
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1214 sugar ABC transporter permease.
  
   0.850
Cphy_0620
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2403 binding-protein-dependent transport system, inner membrane component.
  
   0.850
Cphy_3316
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sma:SAV1726 ABC transporter permease protein.
  
   0.849
Cphy_3408
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: csc:Csac_2515 binding-protein-dependent transport systems inner membrane component.
  
   0.849
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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