STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0322PFAM: protein of unknown function DUF1667; KEGG: ctc:CTC02434 hypothetical protein. (122 aa)    
Predicted Functional Partners:
Cphy_0321
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC02435 sarcosine oxidase alpha subunit.
    0.982
Cphy_0320
PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ctc:CTC02436 glycerol-3-phosphate dehydrogenase.
 
    0.958
Cphy_3393
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: tde:TDE0135 pyridine nucleotide-disulphide oxidoreductase family protein.
    0.907
Cphy_3394
PFAM: FAD dependent oxidoreductase; transport-associated; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: tde:TDE0134 oxidoreductase, FAD-dependent.
 
    0.825
Cphy_0319
PFAM: glycerol-3-phosphate responsive antiterminator; KEGG: spe:Spro_2465 glycerol-3-phosphate responsive antiterminator, GlpP.
 
    0.683
Cphy_0323
PFAM: glycosyl transferase family 2; KEGG: cdf:CD3350 putative glycosyl transferase.
       0.538
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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