STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Cphy_0323PFAM: glycosyl transferase family 2; KEGG: cdf:CD3350 putative glycosyl transferase. (341 aa)    
Predicted Functional Partners:
Cphy_2627
Hypothetical protein; KEGG: mmu:100043744 similar to retinitis pigmentosa GTPase regulator.
  
     0.647
Cphy_3262
PFAM: Collagen triple helix repeat; KEGG: bat:BAS1130 hypothetical protein.
  
     0.563
Cphy_0322
PFAM: protein of unknown function DUF1667; KEGG: ctc:CTC02434 hypothetical protein.
       0.538
Cphy_0320
PFAM: FAD dependent oxidoreductase; BFD domain protein [2Fe-2S]-binding domain protein; KEGG: ctc:CTC02436 glycerol-3-phosphate dehydrogenase.
       0.536
Cphy_2811
PFAM: glycosyl transferase group 1; TPR repeat-containing protein; KEGG: dsy:DSY4437 hypothetical protein.
 
  
 0.524
Cphy_0321
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: ctc:CTC02435 sarcosine oxidase alpha subunit.
       0.521
Cphy_3513
Hypothetical protein.
  
     0.504
Cphy_2700
KEGG: tte:TTE1427 flagellar protein FliO/FliZ.
  
   0.461
Cphy_0324
Peptidase A8 signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins.
     
 0.456
Cphy_1201
KEGG: spd:SPD_0319 undecaprenylphosphate glucosephosphotransferase Cps2E; TIGRFAM: exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase; PFAM: sugar transferase.
  
  
 0.449
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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