STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0334KEGG: sha:SH0302 hypothetical protein. (463 aa)    
Predicted Functional Partners:
Cphy_2293
Hypothetical protein.
  
     0.524
Cphy_0899
KEGG: cth:Cthe_2569 hypothetical protein.
  
     0.522
Cphy_0103
Conserved hypothetical protein; KEGG: lga:LGAS_1449 DNA repair ATPase.
  
     0.495
Cphy_0335
KEGG: tte:TTE1818 DNA polymerase III alpha subunit; TIGRFAM: DNA polymerase III, alpha subunit; PFAM: PHP domain protein; nucleic acid binding OB-fold tRNA/helicase-type; DNA polymerase III alpha subunit; SMART: phosphoesterase PHP domain protein.
       0.454
Cphy_0102
PFAM: metallophosphoesterase; KEGG: cth:Cthe_2411 metallophosphoesterase.
  
     0.452
Cphy_2806
KEGG: cbf:CLI_0985 hypothetical protein.
  
     0.431
Cphy_2816
KEGG: cbf:CLI_0985 hypothetical protein.
  
     0.422
Cphy_0658
KEGG: pmy:Pmen_4204 hypothetical protein.
  
     0.410
Cphy_3811
PFAM: protein of unknown function DUF58; KEGG: csc:Csac_0672 protein of unknown function DUF58.
  
     0.410
Cphy_3035
KEGG: dsy:DSY3902 hypothetical protein.
  
     0.401
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.