STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0337PFAM: ABC transporter transmembrane region; ABC transporter related; SMART: AAA ATPase; KEGG: ctc:CTC01811 multidrug resistance ABC transporter ATP-binding and permease protein. (582 aa)    
Predicted Functional Partners:
potA
Spermidine/putrescine ABC transporter ATPase subunit; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family.
 
 
   
0.694
Cphy_2136
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sgl:SG0677 ABC transporter ATP-binding component.
 
 
  
0.504
Cphy_1829
KEGG: cbe:Cbei_4190 sulfate ABC transporter, ATPase subunit; TIGRFAM: sulfate ABC transporter, ATPase subunit; PFAM: ABC transporter related; SMART: AAA ATPase; Belongs to the ABC transporter superfamily. Sulfate/tungstate importer (TC 3.A.1.6) family.
 
     
0.503
Cphy_0849
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: amt:Amet_1675 ABC transporter related.
 
     
0.497
Cphy_2202
PFAM: phosphopantetheine-binding; KEGG: ckl:CKL_1730 polyketide synthase-related protein.
  
 
 0.491
pfkA
6-phosphofructokinase; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis.
  
   0.458
pstB-2
ABC transporter related; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.438
Cphy_3883
Hypothetical protein; KEGG: tva:TVAG_244940 viral A-type inclusion protein, putative Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH.
   
 0.417
Cphy_0338
PFAM: RNA binding S1 domain protein; SMART: Resolvase RNase H domain protein fold; KEGG: mmp:MMP1127 RNA binding S1.
       0.416
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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