STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0341PFAM: extracellular solute-binding protein family 1; KEGG: bld:BLi01384 lipoprotein; RBL02387. (537 aa)    
Predicted Functional Partners:
Cphy_0339
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi01385 transmembrane lipoprotein; RBL02385.
 
    0.838
Cphy_0340
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi01386 transmembrane lipoprotein; RBL02384.
 
   0.751
Cphy_0343
PFAM: FG-GAP repeat protein; KEGG: bha:BH1114 hypothetical protein.
 
    0.751
Cphy_0393
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3119 sugar ABC transporter permease.
 
    0.749
Cphy_0663
KEGG: csc:Csac_0358 ABC-type sugar transport system periplasmic component-like protein.
  
     0.746
Cphy_0394
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3118 sugar ABC transporter permease.
  
   0.745
Cphy_2192
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3119 sugar ABC transporter permease.
 
    0.734
Cphy_2656
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease.
 
    0.733
Cphy_0773
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB2090 hypothetical conserved protein.
 
    0.729
Cphy_0664
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease.
 
    0.724
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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