STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0388PFAM: oxidoreductase domain protein; KEGG: bth:BT_3586 putative dehydrogenase. (296 aa)    
Predicted Functional Partners:
Cphy_0392
PFAM: NAD-dependent epimerase/dehydratase; KEGG: rba:RB7998 hypothetical protein.
 
  
 0.832
Cphy_0391
KEGG: rba:RB7999 hypothetical protein; Belongs to the DapA family.
 
   
 0.831
Cphy_3572
KEGG: bth:BT_3593 hypothetical protein.
  
     0.764
Cphy_3567
KEGG: sco:SCO0628 secreted protein.
  
    0.739
Cphy_3563
KEGG: bth:BT_0449 conserved hypothetical protein, putative S-layer related protein precursor.
  
     0.661
Cphy_1063
Conserved hypothetical protein; KEGG: bth:BT_0447 S-layer related protein precursor, sialic acid-specific 9-O-acetylesterase.
  
     0.657
Cphy_1207
KEGG: pdi:BDI_0432 putative hexapeptide transferase family protein.
  
     0.549
Cphy_0623
KEGG: rba:RB3971 hypothetical protein-signal peptide and transmembrane prediction.
  
     0.544
Cphy_2029
Hypothetical protein; KEGG: amt:Amet_3803 copper amine oxidase domain protein.
 
     0.531
Cphy_1089
PFAM: extracellular solute-binding protein family 1; KEGG: dsy:DSY1083 hypothetical protein.
 
     0.519
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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