STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0418Hypothetical protein; KEGG: ddi:DDB_0232136 villin. (555 aa)    
Predicted Functional Partners:
Cphy_0880
PFAM: NUDIX hydrolase; KEGG: ecs:ECs3139 hypothetical protein.
  
     0.706
Cphy_0721
KEGG: rno:305567 similar to Hypothetical protein CBG23547 (predicted).
  
     0.701
Cphy_3896
Hypothetical protein; KEGG: tva:TVAG_244940 viral A-type inclusion protein, putative Pfam: DUF2013 Spectrin DUF1945 EzrA Vicilin_N Myosin_tail_1 ATG16 HrpB7 Tektin DUF869 KAR9 Pox_A_type_inc Prefoldin_2 Rad50_zn_hook Hemerythrin Filament Microtub_assoc SF-assemblin Apolipoprotein MpPF2 BRE1 Phage_GP20 PROSITE: GLU_RICH.
  
     0.698
Cphy_3203
Hypothetical protein; KEGG: ehi:82.t00025 viral A-type inclusion protein repeat, putative Pfam: Nha1_C DUF148 ERM Prefoldin_2 WXG100 Vicilin_N TBPIP Myosin_tail_1 Filament YscO Bacillus_HBL EzrA DUF948 Rab5-bind Laminin_I MpPF2 Vps51 MSG Spectrin LMP PROSITE: GLU_RICH LYS_RICH.
  
     0.687
Cphy_2606
KEGG: tte:TTE1137 hypothetical protein.
  
     0.682
Cphy_0935
HD superfamily phosphohydrolase-like protein; KEGG: abu:Abu_1539 conserved hypothetical protein.
  
     0.660
Cphy_2579
Hypothetical protein.
  
     0.630
Cphy_3475
PFAM: Ig domain protein group 2 domain protein; KEGG: dsy:DSY0726 hypothetical protein.
  
     0.630
Cphy_3466
PFAM: SH3 type 3 domain protein; SMART: SH3 domain protein; KEGG: cpf:CPF_1439 mannosyl-glycoprotein endo-beta-N-acetylglucosamidase domain protein, possible enterotoxin.
  
     0.614
Cphy_3891
PFAM: cyclic nucleotide-binding; KEGG: swo:Swol_0580 hypothetical protein.
  
     0.575
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.