STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0422Hypothetical protein; KEGG: sde:Sde_3902 heavy metal efflux pump CzcA. (286 aa)    
Predicted Functional Partners:
Cphy_0453
KEGG: tde:TDE1862 hypothetical protein.
 
  
 0.862
Cphy_3475
PFAM: Ig domain protein group 2 domain protein; KEGG: dsy:DSY0726 hypothetical protein.
  
     0.684
Cphy_1239
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: tde:TDE0148 histidine kinase-related ATPase, putative.
 
  
 0.647
Cphy_3672
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: dsy:DSY1913 hypothetical protein.
 
  
 0.635
Cphy_3096
PFAM: isocitrate/isopropylmalate dehydrogenase; KEGG: mtp:Mthe_0549 isocitrate dehydrogenase (NAD(+)).
  
     0.616
Cphy_0079
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerisation and phosphoacceptor region; KEGG: bld:BLi04006 YxjM.
 
  
 0.586
Cphy_2579
Hypothetical protein.
  
     0.558
Cphy_3629
KEGG: cbe:Cbei_3786 integral membrane sensor signal transduction histidine kinase.
 
  
 0.547
Cphy_1965
Membrane protein-like protein; KEGG: tde:TDE1859 hypothetical protein.
 
  
 0.536
Cphy_3734
KEGG: tte:TTE0157 hypothetical protein.
 
     0.524
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.