STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0437Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: cbf:CLI_2623 transcriptional regulator, Fur family; Belongs to the Fur family. (159 aa)    
Predicted Functional Partners:
Cphy_0439
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_1062 Mn2+/Zn2+ ABC transporter, ATP-binding protein.
 
  
 0.746
Cphy_0440
PFAM: ABC-3 protein; inner-membrane translocator; KEGG: gur:Gura_0048 ABC-3 protein.
 
  
 0.727
Cphy_0438
PFAM: periplasmic solute binding protein; KEGG: lmf:LMOf2365_0168 zinc ABC transporter, zinc-binding protein.
 
  
 0.678
Cphy_0463
Peroxiredoxin; Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides.
  
  
 0.536
rpoA
DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.520
Cphy_3470
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SirA family protein; Rhodanese domain protein; pyridine nucleotide-disulphide oxidoreductase dimerisation region; KEGG: drm:Dred_2967 FAD-dependent pyridine nucleotide-disulphide oxidoreductase; Belongs to the sulfur carrier protein TusA family.
  
  
 0.480
Cphy_0441
Hypothetical protein.
 
     0.477
Cphy_3489
PFAM: ABC-3 protein; KEGG: fnu:FN1810 manganese transport system membrane protein mntB.
 
  
 0.464
Cphy_0436
PFAM: histidine kinase HAMP region domain protein; chemotaxis sensory transducer; KEGG: mba:Mbar_A0989 methyl-accepting chemotaxis protein.
       0.440
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.426
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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