STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0441Hypothetical protein. (217 aa)    
Predicted Functional Partners:
Cphy_0439
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sun:SUN_1062 Mn2+/Zn2+ ABC transporter, ATP-binding protein.
 
     0.921
Cphy_0440
PFAM: ABC-3 protein; inner-membrane translocator; KEGG: gur:Gura_0048 ABC-3 protein.
 
     0.912
Cphy_0438
PFAM: periplasmic solute binding protein; KEGG: lmf:LMOf2365_0168 zinc ABC transporter, zinc-binding protein.
 
     0.904
Cphy_0437
Ferric uptake regulator, Fur family; PFAM: ferric-uptake regulator; KEGG: cbf:CLI_2623 transcriptional regulator, Fur family; Belongs to the Fur family.
 
     0.539
Cphy_1529
PFAM: extracellular solute-binding protein family 1; KEGG: cbe:Cbei_4680 extracellular solute-binding protein, family 1.
  
     0.508
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.