Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Cphy_0473PFAM: protein of unknown function DUF342; KEGG: cth:Cthe_0498 protein of unknown function DUF342. (467 aa)    
Predicted Functional Partners:
Cphy_0249
KEGG: cth:Cthe_2247 regulatory protein, MerR.
 
     0.730
fliW
Protein of unknown function DUF180; Acts as an anti-CsrA protein, binds CsrA and prevents it from repressing translation of its target genes, one of which is flagellin. Binds to flagellin and participates in the assembly of the flagellum.
 
     0.716
Cphy_2715
Hypothetical protein; KEGG: cth:Cthe_0467 flagellar biosynthesis/type III secretory pathway protein-like protein.
 
     0.711
Cphy_0151
PFAM: CheC domain protein; KEGG: csc:Csac_1295 CheC domain protein.
  
     0.689
Cphy_2702
CheC, inhibitor of MCP methylation / FliN fusion protein; TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; CheC domain protein; KEGG: cth:Cthe_0478 CheC, inhibitor of MCP methylation.
 
    0.661
Cphy_2711
PFAM: flagellar hook-length control protein; KEGG: cth:Cthe_0471 flagellar hook-length control protein.
 
     0.650
Cphy_3914
PFAM: protein of unknown function DUF327; KEGG: cth:Cthe_2106 protein of unknown function DUF327.
  
     0.646
Cphy_2703
PFAM: surface presentation of antigens (SPOA) protein; flagellar motor switch protein FliM; KEGG: cth:Cthe_0477 flagellar motor switch protein FliM.
 
     0.640
Cphy_0304
KEGG: cth:Cthe_2245 hypothetical protein.
 
     0.625
Cphy_2688
PFAM: CheC domain protein; KEGG: cth:Cthe_0492 CheC, inhibitor of MCP methylation.
 
    0.577
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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