STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0488PFAM: Heparinase II/III family protein; KEGG: atc:AGR_L_3558 hypothetical protein. (761 aa)    
Predicted Functional Partners:
Cphy_0487
PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_3560 AlgQ1, putative multiple sugar transport system substrate-binding protein.
 
    0.872
Cphy_0485
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, putative multiple sugar transport system permease protein.
 
    0.833
Cphy_0486
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3561 AlgM2, putative multiple sugar transport system permease protein.
 
    0.810
Cphy_0489
PFAM: Heparinase II/III family protein; KEGG: ypi:YpsIP31758_3577 heparinase II/III-like family protein.
 
   
 0.788
Cphy_3242
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, putative multiple sugar transport system permease protein.
 
    0.740
Cphy_0393
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC3119 sugar ABC transporter permease.
 
    0.736
Cphy_0773
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oih:OB2090 hypothetical conserved protein.
 
    0.734
Cphy_0929
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bld:BLi03166 putative membrane protein; RBL03398.
 
    0.734
Cphy_2656
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease.
 
    0.732
Cphy_0664
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0556 sugar ABC transporter permease.
 
    0.731
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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