STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0489PFAM: Heparinase II/III family protein; KEGG: ypi:YpsIP31758_3577 heparinase II/III-like family protein. (622 aa)    
Predicted Functional Partners:
Cphy_0488
PFAM: Heparinase II/III family protein; KEGG: atc:AGR_L_3558 hypothetical protein.
 
   
 0.788
Cphy_0483
PFAM: Cupin 2 conserved barrel domain protein; KEGG: ppr:PBPRB1735 hypothetical protein.
 
     0.698
Cphy_0490
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: cbe:Cbei_3371 short-chain dehydrogenase/reductase SDR.
       0.641
Cphy_3670
PFAM: Cupin 2 conserved barrel domain protein; KEGG: msu:MS0567 hypothetical protein.
 
     0.567
Cphy_0487
PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_3560 AlgQ1, putative multiple sugar transport system substrate-binding protein.
 
     0.537
Cphy_0485
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, putative multiple sugar transport system permease protein.
 
     0.439
Cphy_0486
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3561 AlgM2, putative multiple sugar transport system permease protein.
 
     0.432
Cphy_0491
PFAM: Ribose/galactose isomerase; KEGG: cbe:Cbei_3370 ribose/galactose isomerase.
       0.428
Cphy_0492
Alginate lyase 2; PFAM: Peptidoglycan-binding LysM; Ig domain protein group 2 domain protein; Alginate lyase 2; KEGG: pau:PA14_41500 putative lyase.
       0.409
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.