Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0494PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_0824 sugar transport system sugar-binding protein. (465 aa)    
Predicted Functional Partners:
Cphy_3027
PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PF00303 putative sugar ABC transporter, substrate-binding protein.
  
     0.731
Cphy_0619
PFAM: extracellular solute-binding protein family 1; KEGG: amt:Amet_0896 extracellular solute-binding protein, family 1.
  
     0.685
Cphy_3402
PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC0385 lactose ABC transporter substrate-binding protein.
  
     0.671
Cphy_3401
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0386 lactose ABC transporter permease.
 
   0.606
Cphy_3400
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1119 putative multiple sugar transport system permease protein.
  
   0.584
Cphy_2144
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tde:TDE0182 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.577
Cphy_0529
PFAM: extracellular solute-binding protein family 1; KEGG: efa:EF2234 sugar ABC transporter, sugar-binding protein, putative.
  
     0.575
Cphy_0621
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_0898 binding-protein-dependent transport systems inner membrane component.
  
   0.567
Cphy_0620
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2403 binding-protein-dependent transport system, inner membrane component.
 
   0.564
Cphy_1392
PFAM: extracellular solute-binding protein family 1; KEGG: cpe:CPE0371 conserved hypothetical protein.
  
     0.552
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.