STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0499PFAM: protein of unknown function UPF0029; Domain of unknown function DUF1949; KEGG: gka:GK3152 hypothetical protein. (218 aa)    
Predicted Functional Partners:
Cphy_3520
PFAM: protein of unknown function DUF633; KEGG: cac:CAC1302 predicted SAM-dependent methyltransferase.
   
    0.537
Cphy_0498
PFAM: glycosyl transferase family 51; penicillin-binding protein transpeptidase; KEGG: cno:NT01CX_1810 penicillin-binding protein 1A/1B.
       0.479
Cphy_2792
PFAM: Fmu (Sun) domain protein; KEGG: cth:Cthe_3160 putative RNA methylase, NOL1/NOP2/sun family.
   
  
 0.454
Cphy_0500
PFAM: VanZ family protein; KEGG: cbh:CLC_2550 VanZ family protein.
       0.450
Cphy_1958
PFAM: Mg2 transporter protein CorA family protein; KEGG: tde:TDE1034 magnesium and cobalt transporter, putative.
  
    0.431
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.403
nadE
NAD+ synthetase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
       0.403
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.