STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0509Membrane protein; KEGG: cac:CAC1316 predicted membrane protein. (122 aa)    
Predicted Functional Partners:
Cphy_2859
PFAM: helix-turn-helix domain protein; KEGG: btk:BT9727_1061 probable transcriptional regulator.
  
     0.722
Cphy_1308
PFAM: APHP domain protein; KEGG: fjo:Fjoh_3203 Ig domain protein, group 2 domain protein.
  
     0.663
Cphy_0917
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.660
Cphy_0927
KEGG: cbh:CLC_1692 hypothetical protein.
  
     0.660
Cphy_0676
Hypothetical protein; KEGG: bcz:BCZK1145 acetyltransferase, GNAT family.
  
     0.593
Cphy_0744
KEGG: csc:Csac_0633 ATP-dependent endonuclease of the OLD family-like protein.
  
     0.532
Cphy_3888
Chromosome segregation ATPase-like protein; KEGG: cpr:CPR_0357 hypothetical protein.
  
     0.501
Cphy_2023
PFAM: band 7 protein; KEGG: mlo:mll0592 hypothetical protein.
  
     0.481
Cphy_3145
PFAM: integrase family protein; KEGG: tte:TTE2127 integrase; Belongs to the 'phage' integrase family.
  
     0.445
Cphy_1505
KEGG: amt:Amet_4319 hypothetical protein.
  
     0.437
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.