STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0567KEGG: bha:BH3294 hypothetical protein. (365 aa)    
Predicted Functional Partners:
Cphy_0560
PFAM: periplasmic binding protein; KEGG: cth:Cthe_1754 periplasmic binding protein.
  
  
 0.467
Cphy_2392
PFAM: periplasmic binding protein; KEGG: dsy:DSY3874 hypothetical protein.
  
  
 0.467
Cphy_0568
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; KEGG: apl:APL_0819 HTH-type transcriptional repressor PurR.
       0.435
Cphy_1555
TIGRFAM: LPXTG-motif cell wall anchor domain protein; PFAM: surface protein from Gram-positive cocci anchor region; Cna B domain protein; Collagen binding domain protein; KEGG: bha:BH2014 hypothetical protein.
 
 
   0.422
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.