STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0574PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0086 putative permease protein. (296 aa)    
Predicted Functional Partners:
Cphy_0575
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pac:PPA0087 permease protein.
 
  0.992
Cphy_0573
PFAM: extracellular solute-binding protein family 1; KEGG: pac:PPA0085 periplasmic protein.
 
  0.980
Cphy_1792
PFAM: extracellular solute-binding protein family 1; KEGG: pac:PPA0085 periplasmic protein.
 
  0.967
Cphy_0580
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: tte:TTE0763 ABC-type sugar (aldose) transport system, ATPase component.
   
 
  0.900
Cphy_0577
Conserved hypothetical protein; Reversibly phosphorolyzes beta-D-galactopyranosyl-(1->3)-N- acetyl-D-glucosamine to form alpha-D-galactopyranose 1-phosphate and acetyl-D-glucosamine. Active towards galacto-N-biose and lacto-N-biose. Does not phosphorolyze galacto-N-tetraose or lacto-N-tetraose. In the reverse reaction has activity toward N-acetyl-D-glucosamine and N- acetyl-D-galactosamine, but not L-rhamnose, D-glucose or D-galactose.
 
     0.850
Cphy_3315
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7011 putative membrane transport protein.
  
   0.788
Cphy_1391
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00317 probable sugar ABC transporter, permease protein.
  
   0.783
Cphy_3407
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: tte:TTE2347 sugar permeases.
 
   0.778
Cphy_0289
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 putative permease component of ABC transporter.
  
   0.776
Cphy_0528
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 putative permease component of ABC transporter.
  
   0.775
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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