STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0591PFAM: protein of unknown function DUF1680; KEGG: csc:Csac_0717 protein of unknown function DUF1680. (646 aa)    
Predicted Functional Partners:
Cphy_1169
Alpha-N-arabinofuranosidase; PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: gtn:GTNG_1791 alpha-L-arabinofuranosidase.
 
   
 0.796
Cphy_0592
PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC1213 sugar ABC transporter substrate-binding protein.
 
     0.692
Cphy_0465
KEGG: bha:BH0709 hypothetical protein.
 
     0.559
Cphy_0600
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC3277 dehydrogenase.
 
     0.523
Cphy_0218
PFAM: glycoside hydrolase family 31; KEGG: cbe:Cbei_0772 glycoside hydrolase, family 31; Belongs to the glycosyl hydrolase 31 family.
 
     0.479
Cphy_0650
PFAM: lipolytic protein G-D-S-L family; KEGG: csc:Csac_0779 lipolytic enzyme, G-D-S-L family.
  
     0.411
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.