STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0592PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC1213 sugar ABC transporter substrate-binding protein. (456 aa)    
Predicted Functional Partners:
Cphy_0593
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1214 sugar ABC transporter permease.
 
 0.985
Cphy_0594
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1215 sugar ABC transporter permease.
 
 
 0.838
Cphy_0591
PFAM: protein of unknown function DUF1680; KEGG: csc:Csac_0717 protein of unknown function DUF1680.
 
     0.692
Cphy_0529
PFAM: extracellular solute-binding protein family 1; KEGG: efa:EF2234 sugar ABC transporter, sugar-binding protein, putative.
  
     0.658
Cphy_2144
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: tde:TDE0182 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.533
Cphy_3611
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: cth:Cthe_1862 ABC transporter related protein.
  
 
 0.533
Cphy_0673
PFAM: Abortive infection protein; KEGG: cef:CE0449 hypothetical protein.
  
    0.524
Cphy_3589
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2725 lactose transport system permease protein.
 
 
 0.522
Cphy_3588
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH2724 lactose transport system permease protein.
 
 
 0.500
Cphy_3590
PFAM: extracellular solute-binding protein family 1; KEGG: eca:ECA0848 putative sugar ABC transporter, periplasmic binding protein.
  
     0.482
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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