STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0593PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1214 sugar ABC transporter permease. (308 aa)    
Predicted Functional Partners:
Cphy_0592
PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC1213 sugar ABC transporter substrate-binding protein.
 
 0.985
Cphy_0594
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC1215 sugar ABC transporter permease.
 
   0.965
Cphy_2306
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: btl:BALH_3631 maltosaccharide ABC transporter, permease.
 
 
 0.867
Cphy_1015
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcz:BCZK1636 sugar ABC transporter, permease.
 
   0.854
Cphy_0289
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 putative permease component of ABC transporter.
  
   0.853
Cphy_0528
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 putative permease component of ABC transporter.
  
   0.853
Cphy_1391
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ret:RHE_PF00317 probable sugar ABC transporter, permease protein.
  
   0.853
Cphy_3031
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0318 sugar ABC transporter permease.
  
   0.853
Cphy_0621
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_0898 binding-protein-dependent transport systems inner membrane component.
  
   0.852
Cphy_3315
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sco:SCO7011 putative membrane transport protein.
  
   0.852
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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