STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0600PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC3277 dehydrogenase. (362 aa)    
Predicted Functional Partners:
Cphy_0599
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC0605 oxidoreductase.
 
     0.894
Cphy_0598
PFAM: protein of unknown function DUF112 transmembrane; KEGG: oih:OB3268 hypothetical protein.
 
     0.755
Cphy_0124
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sus:Acid_5936 xylose isomerase domain protein TIM barrel.
 
  
 0.687
Cphy_0465
KEGG: bha:BH0709 hypothetical protein.
 
     0.685
Cphy_0597
KEGG: dsy:DSY0991 hypothetical protein.
       0.680
Cphy_0650
PFAM: lipolytic protein G-D-S-L family; KEGG: csc:Csac_0779 lipolytic enzyme, G-D-S-L family.
  
     0.611
Cphy_0466
PFAM: oxidoreductase domain protein; KEGG: rca:Rcas_4405 oxidoreductase domain protein.
  
     0.584
Cphy_0591
PFAM: protein of unknown function DUF1680; KEGG: csc:Csac_0717 protein of unknown function DUF1680.
 
     0.523
Cphy_0227
PFAM: PfkB domain protein; KEGG: amt:Amet_1262 PfkB domain protein.
  
  
 0.514
Cphy_2739
PFAM: PfkB domain protein; KEGG: bth:BT_0488 2-dehydro-3-deoxygluconokinase.
  
  
 0.514
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.