STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0601PFAM: polysaccharide deacetylase; KEGG: amt:Amet_1617 polysaccharide deacetylase. (259 aa)    
Predicted Functional Partners:
Cphy_0405
PFAM: polysaccharide deacetylase; KEGG: cth:Cthe_1903 polysaccharide deacetylase.
  
     0.771
Cphy_2212
PFAM: glycosyl transferase family 2; chitin synthase; KEGG: msm:MSMEG_0476 chitin synthase.
 
  
 0.445
Cphy_3103
PFAM: glycosyl transferase family 2; KEGG: spt:SPA0786 putative rhamnosyltransferase.
  
  
 0.439
Cphy_0600
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bcl:ABC3277 dehydrogenase.
       0.419
Cphy_0603
PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; pyruvate ferredoxin/flavodoxin oxidoreductase; pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: cdf:CD2682 pyruvate-flavodoxin oxidoreductase.
       0.413
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.