STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cphy_0607PFAM: Glycoside hydrolase, family 20, catalytic core; KEGG: cpe:CPE0981 probable beta-N-acetylhexosaminidase. (606 aa)    
Predicted Functional Partners:
Cphy_1768
KEGG: cbe:Cbei_0751 PTS system, glucose subfamily, IIA subunit; TIGRFAM: PTS system, glucose subfamily, IIA subunit; PTS system, glucose-like IIB subunint; PFAM: sugar-specific permease EIIA 1 domain; phosphotransferase system PTS EIIB protein; phosphotransferase system EIIC.
  
  
 0.990
Cphy_1720
PFAM: glycoside hydrolase family 38; glycosyl hydrolase 38 domain protein; Glycoside hydrolase family 38 central region; KEGG: gka:GK1902 alpha-D-mannosidase.
 
  
 0.705
Cphy_2762
PFAM: sugar-specific permease EIIA 1 domain; KEGG: lpl:lp_3229 beta-glucosides PTS, EIIBCA.
  
    0.619
Cphy_1717
PFAM: extracellular solute-binding protein family 1; KEGG: cpf:CPF_2335 bacterial extracellular solute-binding protein.
 
   
 0.618
Cphy_2896
Hypothetical protein.
  
     0.474
Cphy_0693
PFAM: Endonuclease/exonuclease/phosphatase; KEGG: bfr:BF1755 hypothetical protein.
  
     0.458
Cphy_1714
Glycoside hydrolase family 85; PFAM: coagulation factor 5/8 type domain protein; PKD domain containing protein; glycoside hydrolase family 85; KEGG: cpf:CPF_0285 endo-beta-N-acetylglucosaminidase.
 
   
 0.451
Cphy_0606
Inosine guanosine and xanthosine phosphorylase family; The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate.
  
    0.439
Cphy_1719
PFAM: conserved hypothetical protein; KEGG: bha:BH0790 hypothetical protein.
 
   
 0.430
Cphy_0291
PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL120659 putative substrate-binding component of ABC transporter.
  
     0.424
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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