STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Gene Fusion
Cooccurrence
Coexpression
Experiments
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[Homology]
Score
Cphy_0619PFAM: extracellular solute-binding protein family 1; KEGG: amt:Amet_0896 extracellular solute-binding protein, family 1. (463 aa)    
Predicted Functional Partners:
Cphy_0621
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: amt:Amet_0898 binding-protein-dependent transport systems inner membrane component.
 
  0.984
Cphy_0620
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: eca:ECA2403 binding-protein-dependent transport system, inner membrane component.
 
  0.962
Cphy_3401
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bcl:ABC0386 lactose ABC transporter permease.
 
   0.717
Cphy_0494
PFAM: extracellular solute-binding protein family 1; KEGG: gtn:GTNG_0824 sugar transport system sugar-binding protein.
  
     0.685
Cphy_3027
PFAM: extracellular solute-binding protein family 1; KEGG: ret:RHE_PF00303 putative sugar ABC transporter, substrate-binding protein.
  
     0.685
Cphy_3400
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH1119 putative multiple sugar transport system permease protein.
  
   0.676
Cphy_0341
PFAM: extracellular solute-binding protein family 1; KEGG: bld:BLi01384 lipoprotein; RBL02387.
  
   
 0.632
Cphy_0617
Signal transduction histidine kinase, LytS; PFAM: ATP-binding region ATPase domain protein; histidine kinase internal region; KEGG: cbe:Cbei_4963 integral membrane sensor signal transduction histidine kinase.
 
     0.549
Cphy_0343
PFAM: FG-GAP repeat protein; KEGG: bha:BH1114 hypothetical protein.
  
    0.545
Cphy_0775
PFAM: extracellular solute-binding protein family 1; KEGG: bcl:ABC1144 sugar ABC transporter substrate-binding protein.
  
   
 0.543
Your Current Organism:
Lachnoclostridium phytofermentans
NCBI taxonomy Id: 357809
Other names: Clostridium phytofermentans ISDg, L. phytofermentans ISDg, Lachnoclostridium phytofermentans ISDg
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